Papers for
public health monitoring teams
Papers whose findings have a practical use for this group, as judged from the abstract. Open a paper to read what it means in practice.
Machine learning predicts dengue infection from blood tests in Bangladesh
Machine Learning-Based Prediction of Dengue Infection Using Clinical and Hematological Data from Bangladesh: A Comparative Analysis of Benchmark and Extended Prediction Models
Abstract: Dengue is a viral infection caused by the dengue virus (DENV) and a major public health concern in Bangladesh, where symptom overlap with other febrile illnesses complicates early diagnosis. This study compares Logistic Regression, Random Forest and XGBoost to predict dengue from clinical and hematological data using two Bangladeshi hospital datasets (2024, n=1,511; 2025, n=1,283) with SMOTE. Extended models outperformed benchmarks within 2024 (Random Forest ROC-AUC 0.640 to 0.661), with RDW-CV the most consistently influential added predictor. 2025 benchmark performance was higher (ROC-AUC 0.904), unexplained by class imbalance and possibly reflecting data quality. External validation is needed.
Modular prompt optimization improves stance detection in language models
MoPrO-SD: Modular Prompt Optimization for Stance Detection
Abstract: Stance detection remains challenging for large language models (LLMs) due to implicit opinions, sarcasm, and context-dependent expressions of stance. Although automatic prompt optimization offers an alternative to fine-tuning without updating model parameters, existing structured approaches are not specifically designed around stance-label semantics and class-specific ambiguities. We introduce MoPrO-SD, a stance-specific prompt optimization framework that decomposes prompts into functional semantic modules and refines them sequentially using LLM-based feedback. We study three refinement strategies: instruction-only optimization (I), instruction with reasoning (I+R), and instruction with per-example reasoning (I+R+E), using class-conditioned errors for stance-label refinement. We also introduce VaccineStance, a new human-annotated benchmark for vaccine stance detection. Experiments across four datasets and five open-weight LLMs show that MoPrO-SD improves upon the human-written Base prompt in many settings. On SemEval-2016, class-conditioned feedback achieves higher mean Macro-F1 than pooled feedback for four of five backbones. Both reasoning-based strategies, I+R and I+R+E, achieve strong performance, with their relative effectiveness varying across models and datasets, while remaining competitive with recent prompt optimization methods. The MoPrO-SD code and VaccineStance dataset are available on GitHub.
Ultrasound grading improved by view-based regional evidence for liver fibrosis
VCRE-Fib: View-Conditioned Regional Evidence for Fine-Grained Ultrasound Grading of Schistosoma japonicum-Associated Liver Fibrosis
Abstract: Accurate assessment of Schistosoma japonicum-associated liver fibrosis is essential for disease management and long-term follow-up in endemic regions. Ultrasound provides non-invasive imaging, but complex local echogenic patterns and anatomical structures make fine-grained grading challenging. Existing deep learning methods can predict fibrosis scores, yet directly incorporating acquisition views and regional cues into grading while retaining spatial information for inspection remains an open problem. Here we present VCRE-Fib, a view-conditioned regional evidence framework that integrates anatomical context, local information, and global image assessment for fine-grained ultrasound grading. The framework forms view-conditioned local grading evidence before spatial pooling, uses weak localization to guide its aggregation, and combines it with global predictions. Image-only inference jointly returns a fibrosis score, acquisition view, and candidate abnormal-region map. We developed and evaluated the method on a re-curated cohort of 108,709 ultrasound images from 6,373 patients across 35 centers. On a patient-disjoint test set of 4,107 images from 240 patients across four centers, VCRE-Fib reduced the prespecified composite grading risk by 7.115% relative to SFibAI trained and evaluated on the same data split. Image-level mean absolute error decreased from 0.391 to 0.378, alongside lower patient-max, patient-median, and center-balanced risks. The full model also achieved lower composite grading risk than variants that separately removed view conditioning or weak localization. These results support incorporating anatomical context and regional evidence into ultrasound grading while exposing spatial predictions for inspection alongside severity estimates.
Cross-language model improves respiratory disease detection from speech
A Cross-Lingual Acoustic Disease-Alignment Framework for Respiratory Health Assessment from Spontaneous Speech
Abstract: Spontaneous speech offers a scalable, noninvasive signal for respiratory health assessment, yet interpretable models that generalize across languages remain challenging because disease-related acoustic changes are confounded by language-specific phonetic variation. We present CL-DAF, a Cross-Lingual Disease-Alignment Framework that identifies acoustic dimensions whose disease effects remain consistent across languages. Using 201 English and 75 newly collected Bangla speakers, we construct a common 272-dimensional acoustic representation and quantify disease alignment using signed rank-biserial effects and the Language Invariance Score. We first show that spontaneous Bangla speech separates COPD from controls (AUC 0.85); however, 133 features reverse their disease direction across languages and the full representation transfers poorly (AUC 0.49 from Bangla to English). CL-DAF isolates 26 disease-aligned features that raise AUCs to 0.825 and 0.722 from English to Bangla and Bangla to English, respectively. These findings provide a foundation for multilingual clinical speech models emphasizing pathology over language-dependent variation.