Papers for

pathology ai developers

Papers whose findings have a practical use for this group, as judged from the abstract. Open a paper to read what it means in practice.

Aspect improves accuracy of pathology image reasoning and cell counting

See, Measure, and Reason: Learning Visually Grounded Reasoning in Pathology

Abstract: Pathological assessment relies on recognizing fine-grained visual details in histological images. Vision-language models (VLMs) increasingly support pathology interpretation, yet their ability to perceive these details remains inadequate. This weakness leads to inaccurate cellular observations that can persist even when final answers are correct. In this paper, we propose ASPECT to improve visually grounded reasoning through explicit supervision of cellular appearance and abundance. ASPECT trains intermediate visual tokens through pathology feature reconstruction, cell feature alignment, and count supervision. Three-stage supervised fine-tuning teaches the model to perceive, generate visual tokens, and reason, followed by reinforcement learning that rewards answer correctness and consistency with reported measurements. We also introduce PathoVernier, a benchmark of 759 expert-reviewed questions from five pathology datasets covering four cellular composition tasks. It evaluates both final answers and intermediate measurements to expose errors hidden by answer accuracy. On PathoVernier, ASPECT achieves relative accuracy gains of approximately 19.2% over the strongest baseline, Gemini-3.1-Pro, and 99.3% over its Qwen3-VL-8B backbone, while reducing RAWR, which measures counting errors within correct responses, by 28.1% and 42.7%, respectively. ASPECT also improves over its backbone on three external pathology benchmarks covering classification and question answering beyond cellular composition tasks.

Mon 28 SeptComputer Vision and Pattern RecognitionArtificial Intelligence
The gist
Pathologists need to spot tiny details in microscope images to diagnose diseases correctly. The authors found that current AI models often guess cell details poorly even if their final answers seem right. They created a new system called ASPECT that helps AI better see and count cells by learning from expert feedback and special training steps. When tested on a new benchmark with expert-reviewed questions, ASPECT made fewer counting mistakes and gave more reliable explanations for its answers.
Open → 2609.34277v1

Crf model improves cytology image classification accuracy using stain specific clues

Refining Cytology Predictions with Conditional Random Fields

Abstract: Vision-language models (VLMs) achieve strong zero-shot (ZS) classification on histology images but do not perform as well on cytology, whose stains and cell morphology differ markedly compared to histology. Conditional random fields (CRFs) can refine noisy VLM predictions by propagating information across patches, but existing CRF frameworks were designed for histopathology and do not transfer to cytology datasets, released as independent patch pools spanning multiple staining protocols. We introduce CytoCRF, which adapts the pairwise terms to cytology by targeting chromatin and cytology-specific staining, and further enrich the neighborhood of each potential term by combining multiple backbones. Across ten cytology datasets, CytoCRF outperforms existing CRF frameworks at every annotation budget, reaching +13.6 percentage points over the best baseline and +33.7 over ZS with only 50 annotations. Combining information from multiple backbones brings further gains, showing that the neighborhood topology matters more than the pairwise potential computed over it.

Fri 25 SeptComputer Vision and Pattern Recognition
The gist
Classifying cells in cytology images is harder than in tissue images because the stains and cell shapes differ a lot. The authors show that improving predictions by sharing information between nearby patches helps fix errors, but older methods designed for tissue don’t work well for cytology. They created CytoCRF, which uses special rules tuned for stained cell details and combines different models to better connect patches. This approach consistently beats earlier methods on ten cytology datasets, even with very few labeled examples.
Open → 2609.31028v1