Papers for
molecular simulation engineers
Papers whose findings have a practical use for this group, as judged from the abstract. Open a paper to read what it means in practice.
Langevin transfer method recovers hidden slow dynamics from biased data
Langevin-Informed Transfer Learning: Replacing Target Samples by Black-Box Feedback
Abstract: Many scientific and machine learning systems, from molecular dynamics to diffusion models and beyond, are governed by stochastic dynamics with low-dimensional structure, evolving on slow timescales. However, target trajectories, used to identify and interpret such dynamics, are often inaccessible: only biased or static samples that explore the underlying manifold are available. We introduce Langevin-Informed Transfer Learning (LITL), a framework for recovering target Langevin dynamics from biased source samples using only black-box feedback. LITL learns the leading spectral structure of the target infinitesimal generator and the projected drift through Dirichlet representation learning, enabling kinetic reconstruction in spectral form and slow-manifold gradient field estimation. We further introduce a spherical variant well suited to steering normalized latent representations commonly used in learning systems toward desired objectives. We establish finite-sample guarantees for eigenvalue, eigenfunction, and projected drift estimation in Sobolev norms, thereby ensuring generalization of these quantities and their first-order derivatives. Empirically, LITL recovers physical transition timescales from biased molecular simulations, builds kinetic structure from static samples of generative models, reconstructs spherical symmetries of physical systems, and enables post-hoc latent steering of trained neural networks under black-box feedback. Together, these results position spectral operator learning as a practical framework for recovering stochastic dynamics under distribution shift and unlock applications across machine learning and the physical sciences.
Continuous-time generative models create smooth data evolution paths
Walking the Score Manifold: Continuous-time Generative Dynamics on Learned Data Manifolds
Abstract: Generative modeling of time-dependent data is typically formulated on a discrete temporal grid, restricting supervision to the observed timestamps in the training data. We instead frame generation as continuous-time evolution on a learned data manifold. To this end, we leverage pretrained score-based models as geometric priors and learn a vector field that evolves data along score-induced interpolation paths. Because these dynamics follow transitions that respect the geometry learned by the score model, they support generation at arbitrary timestamps and temporal super-resolution beyond the discretization of the training data. Moreover, this geometric formulation allows us to train the vector field simulation-free through a regression objective. To improve long-horizon rollout robustness, we introduce an objective that promotes path-relative transverse exponential stability. While motivated by stability theory, it admits a practical interpretation as denoising score matching transverse to the interpolation path. Further, we extend the framework to a probabilistic setting that models a distribution over plausible future trajectories. We demonstrate the method on natural video and scientific dynamical data, including temporal super-resolution, PDE-based spatiotemporal fields, and molecular dynamics. Our results show that score-based priors provide a strong foundation for learning stochastic continuous-time generative dynamics.