Papers for

molecular dynamics developers

Papers whose findings have a practical use for this group, as judged from the abstract. Open a paper to read what it means in practice.

Equivariant materials models run faster with new low precision method

Accelerating SO(2)-Equivariant Materials Models through Low-Precision Emulation

Abstract: Rotationally equivariant architectures improve the physical fidelity of machine-learned (ML) universal materials models based on graph neural networks (GNNs). However, their scalability is limited by the use of non-trivial, high-precision tensor operations during both training and inference. Adopting the reduced-precision formats of matrix multiplication units (MMUs), e.g., FP8 instead of FP32, provides massive increases in throughput, up to 30x (60x) on NVIDIA Hopper (Blackwell) GPUs, but may lead to drastic loss of accuracy. Here, we introduce tailored 'emulated' low-precision operations under the integer Ozaki scheme to accelerate the 'SO(2)-equivariant' processing layers of GNNs, which dominate the runtime of (1) many state-of-the-art ML interatomic potentials (MLIPs) and (2) most universal ML Hamiltonian (MLH) models. Our framework, FlashSO(2), outperforms TF32, the most accurate native low-precision MMU format, in throughput, accuracy, and memory footprint at once. At the SO(2) layer level, it reaches 40x (7x) the throughput of MALOQ's (UMA's) reference implementation, an MLH (MLIP) model, sustaining up to 236 (232) effective Tflop/s on an NVIDIA GH200, 3.5x the FP32 peak. At the model level, FlashSO(2) helps train MALOQ 3.9x faster than its pure-FP32 version while reducing peak memory by 58% at no loss in accuracy. In molecular dynamics simulations with UMA, the speedup factor is 3.3x, and the peak memory is reduced by 51%. FlashSO(2) thus pushes the speed-accuracy Pareto frontier of equivariant materials models beyond the native low-precision formats and substantially lowers the resources required to exploit their scaling laws.

Mon 26 OctMachine LearningDistributed, Parallel, and Cluster Computing
The gist
Machine learning models that understand materials often need very precise calculations, which makes them slow. The authors introduce a new technique called FlashSO(2) that speeds up these calculations by using a special low-precision method without losing accuracy. This lets these models run up to 4 times faster in training and more than 3 times faster in some simulations, while also using less memory. The approach is especially helpful for models that rely on rotations and symmetries to better predict material behavior.
Open → 2610.35164v1

Lagrangian neural networks recover complex three-body forces from motion

Recovering Irreducible Three-Body Interactions with Lagrangian Neural Networks

Abstract: Lagrangian Neural Networks (LNNs) learn mechanical systems from trajectory data by parameterizing a scalar Lagrangian and deriving the dynamics through the Euler-Lagrange equations, biasing the model toward motion that respects the variational structure of mechanics. The interactions studied so far have been pairwise-additive, leaving open whether LNNs can recover an irreducible many-body interaction from motion alone. We address this using the Axilrod-Teller triple-dipole interaction, the leading three-body dispersion term, whose dependence on the collective geometry of three particles cannot be represented by any sum of pairwise terms. We prescribe the kinetic energy exactly and learn only the potential, as a function of interparticle distances and angles. Combined with a signal-aware sampling strategy that concentrates training data where the three-body signal is strongest while preserving broad coverage of configuration space, this recovers the interaction from accelerations alone. The learned potential reproduces the radial scaling, angular dependence, and characteristic sign reversal of the Axilrod-Teller interaction, and generates stable trajectories. Embedding it within a pairwise Lennard-Jones potential lets us examine its observability: the three-body term is recovered once its dynamical signature exceeds the residual modeling error, which it does cleanly at amplified coupling but not at the coupling of a real noble gas, bracketing the transition between the two. Finally, symbolic regression on the trained potential, with no assumed functional form, returns the Axilrod-Teller expression with angular numerator, radial law, and coupling constant intact. An LNN with domain-specific structure can thus recover an irreducible three-body interaction from trajectories as a closed-form law, pointing toward learning interaction laws whose structure is not known a priori.

Fri 9 OctMachine Learning
The gist
Some physical forces involve interactions between three objects that cannot be simplified as pairs of two-object forces. This paper shows that a special type of neural network, called a Lagrangian Neural Network, can learn these complicated three-body interactions just by watching how particles move. By cleverly choosing training data and focusing on the potential energy part of the system, the network rediscovered a known three-body force law that depends on angles and distances between three particles. The network even expressed this law in a simple, exact formula without being told the correct mathematical form beforehand. This points to new ways to discover interaction laws when their mathematical structure is unknown.
Open → 2610.13292v1