Papers for

medical software engineers

Papers whose findings have a practical use for this group, as judged from the abstract. Open a paper to read what it means in practice.

Pathology vision language models struggle with language variations in diagnoses

PathLang: A Language-Centered Benchmark for Vision-Language Models in Computational Pathology

Abstract: Pathology vision-language models (VLMs) have shown strong visual perception ability, but their robustness in the language domain remains poorly characterized. Existing pathology VLM benchmarks largely rely on canonical closed-set prompts or perturb only generic templates, treating language as a fixed evaluation component rather than a variable axis of model behavior. In clinical practice, however, diagnostic language varies across reports, institutions, and candidate diagnoses. We introduce PathLang, a language-centered and clinically grounded zero-shot benchmark. PathLang holds the underlying slides, ground-truth labels, and image-text evaluation direction fixed while systematically varying only the diagnostic language, so that performance differences reflect how a diagnosis is phrased rather than what is imaged. The language variation follows how pathologists actually rephrase diagnoses (terminology, specificity, and reporting style), and all prompts and candidate pools are validated by six board-certified pathologists. PathLang covers four task families: (1) zero-shot classification with image-text alignment analysis, (2) cross-modal retrieval, (3) paraphrase robustness, including semantic-equivalence paraphrases, length and reporting-style variation, and prompt ensembling, and (4) open-vocabulary diagnosis retrieval over four candidate pools with distinct forms of semantic competition. Across nine VLMs and five public datasets spanning four organs, we find that performance is highly sensitive to clinically equivalent paraphrases, varies substantially across forms of semantic competition, and that image-text alignment quality does not necessarily translate into inter-class separability. We release the prompt corpus, candidate pools, pre-computed text embeddings, and evaluation code at https://anonymous.4open.science/r/PathLang.

Thu 8 OctComputer Vision and Pattern Recognition
The gist
Pathology vision-language models can understand medical images well, but their ability to handle different ways of saying the same diagnosis is not well studied. The authors created PathLang, a test that changes only the words doctors use to describe diagnoses while keeping images the same. This test shows that the models often perform differently depending on how a diagnosis is phrased, even if the images are identical. This suggests better language understanding is needed in these medical AI systems.
Open → 2610.11329v1

Clinical AI decides when to diagnose or ask for more evidence

Decide, Ask, or Defer: Clinical LLMs under Incomplete Evidence

Abstract: Clinical LLMs must decide not only what diagnosis to produce, but also whether the available evidence is sufficient for autonomous decision making. Binary DECIDE/ABSTAIN formulations merge distinct non decision states and do not explicitly evaluate information acquisition. We introduce a DECIDE/ASK/DEFER formulation together with a blinded protocol that prevents models from using evidence completeness metadata. We evaluate Qwen, Gemini, and GPT on 200 matched clinical evidence states constructed from DDXPlus. The models show substantial differences in action selection under identical evidence, with disagreement in 137 of 200 states. For Qwen, a matched targeted versus random analysis shows that selected information changes the likelihood of a subsequent autonomous decision more clearly than diagnostic correctness. Its matched DECIDE/ABSTAIN baseline further reveals a safety autonomy tradeoff: the three action policy rescues some erroneous autonomous decisions but also removes some correct autonomous deci sions. These results show that separating information acquisition from clinician deferral exposes behavior that binary abstention hides, without yielding a uniformly improved decision policy.

Sat 3 OctArtificial Intelligence
The gist
Making medical decisions with AI is hard when information is incomplete. This paper shows that clinical AI models differ a lot in deciding whether to give a diagnosis, ask for more information, or defer to a human doctor. The authors propose a new way to separate asking for more evidence from simply deferring, which helps reveal subtle behaviors that were hidden before. They tested several AI models and found tradeoffs between safety and autonomous decisions, meaning the new approach helps catch some AI mistakes but also sometimes removes correct decisions.
Open → 2610.04542v1

Synthetic hospital creates realistic open benchmark for clinical AI

Synthetic Hospital: An Open, Verifiable, Physician-Validated Longitudinal EHR Benchmark

Abstract: Frontier language models are rarely used in clinical workflows because the realistic, longitudinal benchmarks needed to develop them are scarce. Real electronic health record (EHR) data cannot be openly shared due to privacy, ethics or data use issues and it does not contain verifiable ground truth since the chart records only reflect what clinicians documented. We introduce Synthetic Hospital, an open, fully synthetic, fact-grounded longitudinal EHR benchmark that resolves the open sharing and verifiable ground truth barriers. Built entirely from public medical-education material with no protected health information, it comprises 1,268 longitudinal patients and 5,602 encounters, where every diagnosis, finding, and temporal relation is grounded in standard ontologies (ICD-10-CM, SNOMED CT, LOINC) and with a complete provenance chain back to its source medical education material. Synthetic Hospital is served through a simulated hospital record system that mirrors real EHR infrastructure (standard interoperability APIs, role-based access and function-calling interface). In a blinded review, physicians distinguished its records from real patient charts at near-chance rates (53\%). Across 10 frontier and open models, none approaches ceiling: the best model reconstructs a patient's longitudinal problem list with a severity-weighted F1 of 0.73, level with the mean of seven physicians on a matched subset but well below the best of them (0.89), and misses roughly half of clinically relevant findings when summarizing a chart. Overall, these results highlight that Synthetic Hospital is a difficult and realistic test of clinical AI performance.

Thu 24 SeptArtificial IntelligenceDatabases
The gist
Access to real medical records is tightly restricted due to privacy, making it hard to build and test AI tools for healthcare. The authors created Synthetic Hospital, a fully artificial and open medical record system based on public educational sources, with accurate medical facts and timelines. It mimics real hospital data and was hard for doctors to distinguish from actual patient charts. Tests show current AI models still struggle with these records, showing Synthetic Hospital is a realistic way to evaluate and improve clinical AI.
Open → 2609.30027v1