marine conservation teams

Abstract: Despite the rapid uptake of black-box object detectors in marine mammal research and monitoring, explainability techniques are rarely integrated into conservation workflows. Furthermore, most classification-oriented explainability tools are ill-suited to detection tasks involving imagery of social organisms or those with colonial life histories, as they ignore multiple detections within a scene and produce single-instance outputs that blur evidence across individuals. These methods also generate low-resolution, often biologically irrelevant visuals, limiting their utility for debugging, targeted data augmentation, and refined data collection. We proposed Det-LIME, a detector-aware, multi-instance adaptation of Local Interpretable Model-Agnostic Explanations (LIME) that produced instance-specific, box-aligned explanations by combining per-detection weighting, a proximity kernel that emphasizes regions near each box, and Intersection-over-Union-based matching to track the same instance across perturbations. We evaluated Det-LIME on aerial drone imagery for harbor seal detection, with an additional seabird case study to assess generality, and compared it with vanilla LIME, Stabilized LIME, Deterministic LIME, and gradient-based attribution methods. Using the Attribution Ratio and Max Saliency Hit Rate metrics, we showed that Det-LIME consistently improved multi-instance attribution. In practice, these higher-resolution, instance-aware explanations provide insight into model outputs and support post-processing, debugging, and actionable improvements in modeling and data collection or augmentation.

Abstract: In order to design conservation and restoration strategies to counter the global decline of coral reefs, ecological monitoring of reefs needs to be scaled up dramatically. Computer vision methods are increasingly used to tackle the vast amount of data: as the paradigm of data collection in reefs shifts from highly standardized and constrained survey images to unconstrained imagery on scalable platforms, it is necessary to design machine learning methods that help to get a fine-grained understanding of reefs from general-purpose reef imagery. This paper provides CoralscapesV2, an extension of the Coralscapes dataset for general-purpose visual scene understanding in reefs. CoralscapesV2 increases the dataset size, scope, label completeness and quality for semantic segmentation, and extends the number of classes from 39 to 95 fine-grained visual categories. Furthermore, CoralscapesV2 provides 65k exhaustive fish instance mask annotations, meticulously annotated to completeness by using the video, revealing that annotation of fish based on only static images is insufficient. CoralscapesV2 is the first dataset for panoptic segmentation in coral reefs, capturing a wide range of scenarios in the wild, posing a challenging benchmark for contemporary semantic segmentation and instance segmentation models. CoralscapesV2 is an important step towards general-purpose panoptic segmentation in coral reefs, which has substantial implications for scaling up coral reef monitoring, as it can be employed in a wide range of applications from benthic cover mapping from robot or handheld videos to designing methods for automated quantification and understanding of fish behavior and fish-reef interactions.