marine biologists

Abstract: Recent advances in bioacoustics have been driven by large-scale corpora and standardized benchmarks, yet existing resources are overwhelmingly bird-centric and shallow per species, limiting their use for studying the structure of a single species' communication system. This gap is particularly acute for cetaceans: despite bottlenose dolphins (Tursiops truncatus) being a compelling case of complex vocal communication among non-human mammals, existing dolphin datasets are small, fragmented, and largely closed. We introduce OpenWhistle, the largest publicly available dataset of dolphin vocalizations. It comprises approximately 180,000 whistles (114 hours) recorded over five years from a stable pod of five individuals in a semi-natural environment, paired with a curated subset of 8,354 expert-annotated whistles and reproducible evaluation protocols for whistle-type detection and classification. We further release the full processing pipeline for whistle detection, segmentation, and categorization. To demonstrate its utility, we pretrain a Wav2Vec2.0 model adapted to dolphin acoustics on the OpenWhistle corpus and show that it learns effective representations, outperforming general-purpose bioacoustic models such as AVES and BioLingual on both tasks while leaving meaningful headroom for future work. By releasing the dataset, pipeline, and evaluation protocol, we provide the first open dolphin whistle dataset tailored for training self-supervised models, laying the groundwork for advancing dolphin communication research and developing models that capture fine-grained acoustic structure within species.

Abstract: Training data quantity and quality greatly affect object detection model performance, regardless of model architecture. When using object detection models on video and images from the deep sea, in which the objects of interest, primarily organisms, are sparse, faint, and hard to identify, incremental improvements to object detector performance may require an iterative approach to data labeling and management. This paper presents mbariml, a python-based video and image analysis pipeline built around the data labeling management process. mbariml uses an Ultralytics YOLO detection model, runs it over still images or video, stores every detection as a reviewable region of interest, groups those regions by visual similarity so that a human can accept or reject them in bulk, and exports the result as training data, statistics, image sidecars, and additional metadata. The human review stage is the centre of the design: an annotator can validate, relabel, resize, delete, and draw entirely new localizations, and every one of those edits is written back to the same database the detector wrote to. Video receives particular attention: the software treats each tracker-produced track as a provisional observation and selects one representative frame instead of retaining every detection in the track. We describe the pipeline stage by stage, including the operational middle-third heuristic used for track observation selection.

Abstract: Autonomous underwater vehicles (AUVs) are a promising alternative to divers for scalable collection of natural ocean ecology data. However, these robots may disturb local fauna and cause drastic behavioral differences compared to other monitoring techniques, decreasing their value as scientific tools. A promising prospect is to make AUVs that are more biomimetic, with the hope that taking on the form and behavior of a non-predatory animal may reduce adverse responses. We present the first dataset comparing fish disturbance in response to a conventional thruster-driven AUV, a sea turtle inspired flipper-driven AUV, and a diver. Experiments were conducted at a biodiversity hotspot in a Caribbean reef, and images of the scene were analyzed using computer vision to localize and study fish behavior change. Both AUVs cause measurable changes in fish behavior. Although no between-robot differences remain significant after correction for multiple comparisons, point estimates generally favor the biomimetic AUV, motivating larger studies capable of resolving modest effects and further design changes to optimize for disturbance. We also observe larger responses during diver transects than during AUV transects, although this exploratory comparison is based on a small diver sample with several confounds. While conclusions must be taken as preliminary due to operational and experimental limitations, this study provides the community with a first known dataset and benchmarks to quantify the behavioral impacts of biomimetic robots for ecological monitoring in the wild.

Abstract: Passive acoustic monitoring (PAM) is an effective and widely used tool for tracking marine mammals, particularly beaked whales, which are infrequently observed visually because of their deep-diving behavior. However, the large data sets generated by PAM methods often require time-consuming hand labeling to identify whale trajectories in the recorded audio. Automated multi-target tracking (MTT) methods could significantly reduce human workload, but current methods have difficulty forming continuous tracks because of the irregularity of beaked whale echolocation clicks. More precisely, regular sequences of clicks are often interrupted by longer pauses that occur when whales face away from the sensors or stop clicking. Consequently, the probability of detection is difficult to model accurately, and MTT trajectories become fragmented at these pauses. In this paper, we propose a multistage target-estimation method aimed at bridging large gaps in click sequences by combining belief propagation-based MTT with track smoothing and stitching. We validate our method using acoustic recordings of clicks from goose-beaked whales (Ziphius cavirostris), and demonstrate that it improves track estimates and reduces fragmentation in the presence of consecutive missed detections. When evaluated with the generalized optimal subpattern assignment (GOSPA) metric, our method outperforms existing MTT reference methods through reductions in missed-target errors.