Abstract: Large-scale scientific workflows run on distributed HPC resources, making it hard to explain how scientific data products are generated and why similar workflow executions can yield very different results. Existing systems usually focus on either distributed workflow execution or provenance management and rarely treat fine-grained provenance as an intrinsic property of distributed scientific data artifacts. We present TRACEs (Traceable Runtime for Advanced Containerized Executions), a provenance architecture for distributed containerized scientific workflows that embeds data lineage and execution context directly in every generated data artifact. By decoupling provenance from workflow orchestration, TRACEs generalizes artifact-centric provenance from local container runs to distributed workflows while remaining compatible with existing workflow management systems. We evaluate TRACEs on a seven-stage E. coli variant-calling workflow distributed across multiple HPC nodes. Our results show 100% provenance completeness under distributed execution, about 59% less intermediate storage via sparse IMG containers, and runtime and zero-copy I/O throughput comparable to fixed-size SIF containers, plus provenance-guided explanations of workflow variability that trace a 200-fold difference in variant counts to differences in input sequencing data without re-executing the workflow.