Papers for
data engineers
Papers whose findings have a practical use for this group, as judged from the abstract. Open a paper to read what it means in practice.
Evaluating historical search systems requires testing memory and data versions
A Historical Corpus Is Not a Historical System: Auditing Hindsight Leakage in Stateful Data Discovery
Abstract: Offline replay should estimate what a discovery system could retrieve at a historical point, yet freezing the corpus leaves interaction memory unconstrained. We formalize point-in-time (PIT) discovery through historical state $(D_t, θ_t, M_{< i})$ and introduce a paired replay that changes only memory availability. The protocol constructs PIT and full-stream Future views from behavior-only traces and audits selected entries with a Temporal Violation Rate. Across three table-text domains, two stream regimes, two retrievers, and five seeds (216,000 rows), Future inflated Asset Recall@100 by 2.62-5.24 points; all 12 paired intervals excluded zero. With behavior-only trace memory, PIT underperformed the no-memory Stateless condition; Future masked 32.7-48.4% of that harm. For a simulated positive-feedback cache, PIT added 4.65-18.96 points over Stateless while Future added another 4.11-9.58 points. On five timestamped FreshStack topics, Future exceeded PIT by 2.72 points [1.75, 3.71]. Historical evaluation must version and validate memory with the corpus.
Knowledge graph edits often displace correct answers in ranking lists
When Successful Knowledge Graph Edits Displace Correct Answers: Rank-Level Locality beyond Parameter Support
Abstract: Editing a knowledge graph embedding (KGE) model to promote a desired answer can displace correct answers from the returned list. Locality tests based only on facts that reuse the edited parameter can miss this ranking effect. We introduce a common rank-displacement audit at three scopes: facts supported by the edited parameter, other correct answers to the target query, and correct answers across queries with the same relation. We also derive dimensional and geometric conditions for an update to improve the target while exactly preserving selected scores. On FB15k-237 with DistMult and ComplEx, direct promotion always moves the target into the top ten, but does so without damage in only 23.0--23.2\% of edits. Strict preservation causes no measured damage, yet succeeds in only 1.3--1.4\%. Support-regularized entity editing gives the highest joint success, 36.3--37.7\%, while rank-truncated preservation reaches 32.8--34.7\% and reduces the mean number of displaced answers from about 14 to 1.2. Experiments across dimensions, scorers, ranking conventions, and a learned editor show that locality depends on both the protected scope and the editing mechanism. KGE editing should therefore report correction success together with the incidence and severity of rank displacement.
Faster local algorithm speeds up pagerank and graph analysis
Accelerating the Local Push Primitive for PageRank Computation
Abstract: We propose a local algorithm that computes an $\varepsilon$-approximate PageRank vector in the sense of Andersen, Chung, and Lang (ACL; Internet Math. 2007) with teleportation parameter $α$ in $\widetilde{O}\bigl(1 / \bigl(\sqrtα \, \varepsilon\bigr)\bigr)$ time with high probability, improving the $O\bigl(1/(α\varepsilon)\bigr)$ running time of their original local push method. Our method also applies to the $\ell_1$-regularized PageRank problem with a running time of $\widetilde{O}\bigl(1 / \bigl(\sqrtα \, ρ\bigr)\bigr)$ for regularization parameter $ρ$, giving a positive answer to the open problem posed by Fountoulakis and Yang (COLT 2022). Our faster primitive has the potential to improve a broad range of graph algorithms that rely on local push. For example, substituting our primitive into the ACL framework directly yields faster PageRank-based local graph clustering, and we also develop reductions that lead to faster algorithms for effective resistance estimation. Our main technical contribution is a potential-function analysis of a refinement of the active-set method of Wei and Yang (preprint 2026), which repeatedly invokes an SDD solver on the current active set of nodes and expands the set. We relate the potential decreases over consecutive blocks of expansions to show that the number of expansions is bounded by $\widetilde{O}\bigl(1 / \sqrtα\bigr)$.
Reifying knowledge graphs enables zero-shot link prediction with simple GNNs
Reification as a Transferable Vocabulary: Zero-Shot Link Prediction with Vanilla GNNs
Abstract: Knowledge graph foundation models such as ULTRA achieve zero-shot link prediction on unseen graphs through dedicated architectures that hard-code a transfer mechanism. In this work we move that mechanism out of the architecture and into the representation, by \emph{reifying} the input graph: every fact becomes a node, connected to its subject, object, and relation type through a fixed vocabulary of six meta-relations, with relation types as anonymous shared nodes rather than model parameters. On this representation, five textbook GNNs (GAT, GINE with sum and with mean+max aggregation, GraphSAGE, R-GCN), each trained on a single knowledge graph of 4,245 triples for 30 minutes on one NVIDIA A100, transfer zero-shot to 40 inductive link-prediction benchmarks. The best of them, an off-the-shelf GAT, matches ULTRA, a dedicated foundation model pretrained on three graphs, across ULTRA's own evaluation suite. The same fixed vocabulary extends to relational databases, a row becoming an entity and a foreign-key column a relation type; a preliminary probe on two unseen databases, with no cell values, schema text or in-context labels, shows a model of this family pretrained on three knowledge graphs ranking foreign-key targets far above random-initialization and degree controls. We release the code, the checkpoints, and the evaluation pipeline for all 40 benchmarks.
Hierarchical clustering meets key fairness axioms that flat clustering cannot
Hierarchical Clustering Can Jointly Satisfy Richness, Consistency, and Scale Invariance
Abstract: Despite its ubiquity, clustering lacks a universally accepted definition of what is a cluster. Kleinberg's Impossibility Theorem formalizes this difficulty by showing that no flat clustering method can simultaneously satisfy three natural axioms: scale invariance, richness, and consistency. In this paper, we ask whether this impossibility persists when the output is a hierarchy rather than a single partition. We show that, in contrast to the flat clustering setting, the hierarchical analog of these axioms are jointly satisfiable. In fact, there exist uncountably many hierarchical clustering methods satisfying these axioms, which we call admissible. We explicitly construct several admissible methods, including methods based on well-separated clusters and a non-binary version of single linkage. For certain pairs of admissible methods, the hierarchy produced by one always refines that produced by the other. This refinement relation defines a partial order on the class of admissible methods. This partially ordered set has no greatest element and contains uncountably many pairwise incompatible maximal elements, revealing substantial diversity among admissible methods. Nevertheless, this diversity is constrained: every admissible method contains a hierarchy of sufficiently well-separated clusters, and every finite collection of admissible methods shares such a nontrivial common backbone.
Specified counterfactuals reveal how past changes alter graph predictions
Breaking Predictions Is Not Enough: Specified-Foil Counterfactuals for Temporal Graphs
Abstract: Temporal graph counterfactual explanations typically change past events to change or invalidate an original prediction, while leaving its replacement unspecified. Yet a user facing a predicted outcome often asks which past conditions would make a particular alternative occur instead. We formulate this destination-specific question as the Specified-Foil Counterfactual: given an original prediction A and a foil B fixed before search, find a low-cost past-event intervention under which the same predictor selects B as top-ranked. Our trace-guided intervention search contrasts the completed execution of A with a reconstructed incomplete execution of B, maps their difference to DELETE, INSERT, REWIRE, RELABEL, and SHIFT operations, and verifies B through exact replay. We instantiate this principle with LiFTER on continuous-time dynamic graphs and TLogic on temporal knowledge graphs. On CTDGs, the method retains 85.7-93.6% of black-box greedy successes while reducing predictor evaluations by 75.0-80.0%; on TKGs, it reaches the specified foil in 74.8% of 600 comparisons. Executable traces thereby become computational structures for constructing conditions of unselected alternatives, rather than records used only to explain predictions already made.
Graph condensation improved for diverse node label patterns in networks
HERALD: High-Fidelity Exemplar Retrieval with Adaptive Landmark Distillation for Heterophily-Aware Graph Condensation
Abstract: Graph condensation aims to produce a small surrogate graph that preserves the downstream node-classification performance of a much larger original graph. Existing methods rely on Weisfeiler-Lehman neighbourhood aggregation or gradient-based distribution matching, both of which assume that adjacent nodes share the same label, an assumption that breaks down under heterophily. We propose HERALD (High-fidelity Exemplar Retrieval with Adaptive Landmark Distillation), a gradient-free graph condensation framework that adapts the node scoring and feature selection in the condensation pipeline to the graph's measured heterophily. HERALD selects features via a joint Fisher-discriminability and activation-density criterion that down-weights aggregated representations on heterophilic graphs, and scores nodes by a weighted combination of prototype representativeness, decision-boundary proximity, and Local Intrinsic Dimensionality (LID), where the weights are driven by a smooth sigmoid function of the heterophily ratio. Nodes are then assembled into a condensed subgraph through score-ordered BFS expansion, Personalised PageRank pruning, and class rebalancing, all at an identical storage budget to BONSAI, enabling direct comparison. Experiments on eight benchmark datasets spanning homophilic and heterophilic settings show that HERALD matches or outperforms state-of-the-art condensers on heterophilic graphs and remains competitive on homophilic ones across four GNN architectures.
Reinforcement learning finds causes of problems in simulated ad data
TRACE: Training Reasoning Agents for Causal Exploration with Synthesized Rewards
Abstract: Reinforcement learning with verifiable rewards (RLVR) has advanced language-model reasoning in domains such as mathematics and code, where objective answers are inexpensive to check. Diagnostic reasoning over complex data lacks this advantage: establishing the true cause of an anomaly often requires costly expert investigation and may remain ambiguous after the fact. We ask whether this asymmetry of verification can instead be engineered. We sample an intervention, inject it into a controlled simulator, and generate the observations it would produce. The hidden intervention provides an oracle label and objective reward, while the agent must still investigate noisy, confounded, and distributed evidence. We instantiate this approach in TRACE, a digital-advertising diagnostic environment with 12 root causes and fine-grained segment attribution. Agents investigate each episode using Python and SQL and must identify both the root cause and, when applicable, the affected segment assignment. On a held-out 235-episode test set, the strongest prompted baseline, Claude Opus 5, reaches 0.686 FullAttr@1. Supervised fine-tuning raises Qwen3.5-35B-A3B from 0.159 to 0.637, and subsequent RL with synthesized rewards reaches 0.757, outperforming all evaluated prompted baselines, including frontier closed-source models and a prompted Qwen3.5-122B-A10B model. The resulting policy also uses substantially fewer tool calls than the prompted 35B base. These results provide evidence that access to a scalable, objective training signal can be a more important constraint than model scale alone. More broadly, simulation-based verification can make otherwise ambiguous diagnostic reasoning tasks amenable to scalable reinforcement learning.
HOPE improves graph node classification in networks with diverse connections
HOPE: Heterophily-Aware Open-Set Node Classification with Pseudo-Extrapolation
Abstract: Standard open-set node classification methods rely on the homophily assumption, where connected nodes share labels. However, real-world graphs are often heterophilic, exposing the limitations of current methods and posing new challenges to open-set node classification. On the one hand, cross-class connectivity causes representations from different known or unknown classes to become intertwined after aggregation, undermining their discriminative capacity. On the other hand, structural mixture invalidates threshold-based open-set methods and cross-class feature interpolation, leading to unreliable unknown-class rejection. To address these challenges, we propose HOPE, a Heterophily-aware Open-set node classification method with Pseudo-Extrapolation. To adapt open-set graph neural networks (GNNs) to heterophilic scenarios, HOPE uses a structure-augmented feature initialization layer to capture multi-hop structural patterns. Meanwhile, we design a trustworthy neighborhood aggregation mechanism for standard GNNs to dynamically filter noisy cross-class neighbors. To enhance unknown-class rejection, we introduce a heterophily-guided pseudo-extrapolation strategy. It dynamically maintains known-class centers and extrapolates along cross-class neighborhood displacement directions, synthesizing pseudo-unknown proxies near structurally ambiguous regions. Finally, we optimize the network with joint classification and logit margin regularization, routing synthetic proxies into a dedicated rejection slot without imposing geometric margin constraints in the representation space. Extensive experiments on multiple datasets show that HOPE consistently outperforms state-of-the-art models, validating its effectiveness, robustness, and efficiency.
Non-adaptive one-bit communication matches adaptive mean estimation rates
Non-Adaptive 1-Bit Mean Estimation: Minimax Rates and the Sample-Interval Tradeoff
Abstract: We study distributed one-dimensional mean estimation under a 1-bit communication constraint. Each agent observes one sample, drawn independently from an unknown distribution, and returns a single bit in response to a query $Q: \mathbb{R}\to\{0,1\}$ chosen by a central learner. The distribution has mean in $[-λ,λ]$ and $k$-th central moment at most $σ^k$, for a fixed $k>1$. The order-optimal two-stage protocol of Lau and Scarlett uses responses from the first batch to choose the second-batch queries, motivating the question of whether this single round of interaction is necessary. We answer this negatively: for every $k>1$, a non-adaptive protocol attains the adaptive 1-bit minimax rate (and concurrent works reached the same conclusion via different strategies). We further determine the minimax sample complexity among non-adaptive 1-bit estimators when every one-set $Q^{-1}(1)$ is restricted to a union of at most $s$ intervals. Relative to unrestricted non-adaptive 1-bit querying, this constraint adds a term of order $(λσ/(s\varepsilon^2))\log(1/δ)$, giving the full tradeoff between sample complexity and interval complexity to within $k$-dependent constant factors. As a corollary, we identify, order-wise, the minimum interval budget needed to retain the unrestricted 1-bit minimax sample rate.
Graph topology generates strong node embeddings without training
Topology-induced Operators Reveal Complementary Graph Representations without Training
Abstract: Graph representation learning has largely focused on designing increasingly sophisticated models to transform graph topology into vector representations, or embeddings. However, the extent to which embedding quality depends on model learning, rather than on the underlying topological transformations, remains unclear. Here, we show that informative embeddings can be derived without complicated model design and gradient-based training. Propagating random features through implicit hierarchical structures induced by random walks and anonymous walks yields embeddings that capture node proximity and structural role, respectively. These two training-free embeddings preserve complementary aspects of graph organization and perform competitively with classic and recent methods across various node-, edge-, and graph-level tasks. They often require substantially less computation, resulting in a favorable quality-efficiency trade-off. Combining the two types of embeddings further improves inference quality of some tasks compared with using either embedding type alone. Our results suggest that informative graph embeddings can arise from carefully chosen topological transformations before any learning operation is applied.
URL extraction from scholarly papers varies by document format
URL Extraction from Scholarly Documents: A Cross-Format Comparative Analysis
Abstract: URLs in scholarly documents link to rich external resources such as datasets, software, publications, and websites. Extracting these URLs is crucial in the data preparation stage of many downstream tasks, such as link rot analysis, web crawling, and building knowledge graphs. However, existing studies often downplay this phase, simply extracting URLs from a single format, usually text directly converted from PDFs. We present a systematic study evaluating URL extraction across six input formats (text with annotation layer, LaTeX, HTML, XML, Markdown, and PNG converted from PDF). To support the evaluation, we compiled a benchmark dataset consisting of 2,338 manually annotated URLs from 200 arXiv papers spanning a wide range of domains over a 33-year period. In addition to evaluating individual file formats, we also compared 63 composite input-format combinations. Our extensive evaluations indicate that TEXTWAL achieves the best performance among single-format inputs, while TEXTWAL+LaTeX achieves the best overall URL extraction performance. The same trend is observed for URLs linking to open-access datasets and software. To further validate these findings, we apply our format-specific URL extraction pipelines to a longitudinal random sample of 364,744 arXiv papers spanning 33 years. We observe a sharp increase in URL density after 2015, along with remarkable differences in URL extraction across file formats over time. Overall, our study highlights the importance of selecting an appropriate format for URL extraction from scholarly documents. The dataset and code are publicly available at: https://github.com/lamps-lab/arxiv-url-bench .
Hierarchical system speeds up predictions on streaming data with edge and cloud
Streaming Hierarchical Inference with Tabular Foundation Models
Abstract: Tabular Foundation Models (TFMs) have recently demonstrated strong predictive performance through in-context learning, but their deployment in high-throughput data streams remains challenging due to communication overhead and latency. We propose \textit{HINT}, a hierarchical inference framework that combines edge-based retrieval with cloud-based TFM inference. A graph-based approximate nearest neighbor memory maintained over a sliding window provides local predictions and uncertainty estimates, allowing confident samples to be processed locally while uncertain instances are selectively offloaded, together with their retrieved context, to a cloud-hosted TFM. The framework exposes an offloading threshold and a neighborhood retrieval policy that can be varied to balance predictive performance and communication cost. Experiments show \textit{HINT} consistently identifies favorable trade-offs.
Understanding the cost and constraints in hierarchical clustering trees
Dasgupta's Hierarchical Clustering Objective: Geometry and the Price of the Cardinality Constraint
Abstract: The cost of a hierarchical clustering can be represented by an ultrametric whose lowest-common-ancestor labels are cluster cardinalities. We relate this known representation to the shortest-path geometry of a similarity graph. For a connected support graph $G$, let $d_G$ be its unit-length shortest-path metric and let the edge weights enter only the objective. We prove that the shifted Dasgupta optimum is exactly the minimum edge-weighted cost of a cardinality-realizable ultrametric that dominates $d_G$. Connectedification lemmas put this problem and its freely labeled dominating-ultrametric relaxation on the same class of connected binary hierarchies, labeled respectively by cardinality and graph diameter. As a sharp baseline, we determine the exact worst-case price of cardinality realizability: on every $n$-vertex instance the ratio of the two optima is at most $(2n-1)/3$, with equality on the unweighted complete graph; the sharp factor for the standard unshifted objective is $2(n+1)/3$. Our principal structural result bounds this gap by a hereditary weighted fragmentation profile defined through connected balanced cuts. Uniform local control gives an $O(\log n)$ gap, polynomial decay gives a constant gap, and the logarithmic order is tight even for unweighted trees of maximum degree $3$. On locally regular bounded-degree trees, the hierarchy can be constructed in $O(n\log n)$ time. An energy decomposition and a geometric density bound provide supporting instance-sensitive estimates. Thus the cardinality label has an unavoidable linear worst case but admits substantially smaller bounds on natural sparse graph classes.