Papers for
chemical data analysts
Papers whose findings have a practical use for this group, as judged from the abstract. Open a paper to read what it means in practice.
Trained neural kernels reveal hidden geometry of superconducting materials
Learning the Geometry of Materials Space with Trained Neural Tangent Kernels
Abstract: Neural networks trained to predict materials properties learn representations whose physical content can be difficult to extract. We use the neural tangent kernel (NTK), evaluated at trained parameters, to recover the geometry learned by a network that predicts superconducting transition temperatures from elemental composition alone. Kernel ridge regression with the trained NTK closely reproduces the network's predictive performance and substantially outperforms regression with the initial kernel. Spectral analysis and multidimensional scaling reveal a geometry dominated by a small number of directions. Clustering and local neighborhood analysis organize compounds into recognizable superconducting families and connect materials with related chemical and correlated-electron properties despite substantial differences in $T_c$. These results establish trained tangent kernels as practical probes of learned materials representations, connecting property prediction with the exploration of materials space.
Invertible mapping improves 2D visualization of complex data
NFMap: Topographic 2D Manifold Learning with Invertible Normalizing Flows
Abstract: We present NFMap, a dimensionality reduction method for 2D visualisation that extends Generative Topographic Mapping (GTM) with a bijective normalizing flow. Like GTM, NFMap places a fixed mixture grid prior over a 2D latent map, giving a parametric embedding, an explicit likelihood, and the ability to project new points onto an existing map; the likelihood is an effective out-of-distribution signal on chemical datasets. Unlike GTM, whose latent-to-data mapping is an RBF network of bounded flexibility, NFMap's mapping is a normalizing flow, and is therefore fully invertible: any location on the map can be carried back to data space. To alleviate map crowding on large datasets, NFMap additionally supports heavy-tailed Student-t mixture components. NFMap maps data to a latent space of the same dimension, split into a 2-dimensional navigable map and an off-manifold residual. Because the flow is bijective and its objective penalises volume contraction, variance squeezed out of the residual must reappear in the navigable map. The residual scale is the main control between local neighbourhood fidelity and global distance fidelity; its effect depends on the dimensionality of the data and is coupled to the extent of the latent grid.