Papers for
animal behavior researchers
Papers whose findings have a practical use for this group, as judged from the abstract. Open a paper to read what it means in practice.
FishSense Lite measures fish length with camera and laser easily
FishSense Lite: A Camera-Based, Single Laser Hardware Framework with Software System for In Situ Fish Length Measurement
Abstract: Fish stock assessments need fish lengths paired with species from far more places than trained surveyors can reach. Recreational divers already visit many of those places, but measuring a fish underwater has required trained observers or specialist equipment. We present FishSense Lite, which recovers fish length from a single photograph taken with a recreational dive camera, a dive laser pointer, and a 3D-printed mount. The diver aims the laser at a fish and takes a picture; afterward, the dot's position in the image gives the range to the fish, and the range turns the fish's size in the image into a length. A citizen-science program, trained by the system's builders, taught its own divers and collected lengths paired with species for 73 wild fish across seven open-water dives. On seven wild fish also measured by an underwater stereo-imaging system, the two instruments agreed without detectable bias (mean difference +0.8%). On rigid targets of known length, FishSense Lite recovered every target to within 1.3%, and 99% of 1,055 frames fell within a 15% error budget. From the error sources we measure, we derive a field protocol: calibrate against a dive slate on every dive, photograph fish within 15 degrees of perpendicular and beyond 1 m, and take at least ten frames of each.
Short term animal movements reveal learning and individual traits
Representing short-term movement to reveal animal identity and learning progress
Abstract: How learning progresses over time and varies across individuals is a longstanding question in cognitive and behavioral science. However, a major challenge is identifying observable behavioral measures that faithfully capture learning progression. Existing approaches commonly rely on predefined behavioral features or task-level performance, while fine-scale posture and movement in freely behaving animals remain less explored. In this paper, we ask: can short-term movement trajectories reveal learning progress and individual identity? We introduce a self-supervised representation learning framework built on a simple hypothesis: behavioral characteristics associated with identity and learning remain relatively stable over nearby time intervals. Using temporal proximity as supervision, our framework learns compact representations directly from movement trajectories without manually defining behavioral states or kinematic features. Using behavior data from freely behaving rats, we show that the learned representations not only improve prediction of identity and learning-related readouts over existing methods, but also provide a tool for investigating broader scientific questions about when and how these signals appear in behavior. Specifically, trajectories as short as one second contain informative learning and identity signals. Egocentric pose dynamics are more predictive of identity, whereas allocentric motion is more predictive of learning-related variation, and both signals are strongest at decision junctions in the alternation cohort. We further use a representation-conditioned diffusion model to inspect movement patterns associated with identity and learning progress. Our findings establish short-term movement as an informative behavioral "fingerprint" for studying learning and individual differences. Our code is available at https://github.com/pizhn/TRAIL.
Bossou chimpanzee video dataset spans three decades of wildlife recordings
BossouChimpanzee: Long-term Chimpanzee Video Dataset
Abstract: We describe the BossouChimpanzee video dataset, a unique long-term visual record of wild chimpanzees at an outdoor laboratory for field experiments in Bossou, Guinea, spanning three decades (1988-2018) and comprising over 1,200 hours of continuous video recordings collected through collaborative fieldwork and research. In this paper, we outline the history and scientific contributions of the experimental paradigm and video archive, provide key statistics and details on the structure of the main video dataset, and release an initial ~74h snapshot, BossouChimpanzee70h, covering 23 identified individuals focused on chimpanzee individual and action recognition, ahead of the full video resource. This dataset represents a valuable resource for cognitive and behavioural research in ethology and a rich benchmark for training and evaluating machine learning models on audiovisual data from the wild.