Papers for
agriculture technology developers
Papers whose findings have a practical use for this group, as judged from the abstract. Open a paper to read what it means in practice.
Intelligent system turns hive photos into beekeeper inspection reports
Computer Vision and Knowledge-Grounded Language Models for Intelligent Beekeeper Assistance
Abstract: Managed and wild bees sustain roughly a third of the global food products, yet colonies face mounting stress from climate-change including extreme weather patterns, altered parasite and disease patterns. Timely assessment of colony condition such as understanding colony strength, brood area, honey and pollen storage, comb usage, is essential to adaptive management. However, manual hive frame inspection is slow, costly, and quality depends on scarce expertise. We present an artificial targeted intelligent system framework focusing on edge deployable pipeline that turns hive frame photographs into interpretable and action-oriented inspection report. The pipeline includes an object detector to detect biologically-meaningful comb-cell classes; detections are distilled into structured fact schema; facts are converted into constrained factual text; the text triggers a grounded knowledge-base for interpretations and recommendations. Knowledge-base entries are required to be triggerable by evidence expressed in the fact schema. We built our system based on open source FAIRHiveFrames-1K dataset and favour reproducible, edge-deployable models over large general purpose frontier models. We additionally release FAIRHiveText-1K dataset that turns FAIRHiveFrames-1K dataset into interchangeable facts and text interpretation of the facts, making it easy for further LLM-based research into this area. We also propose a pathway to develop the grounded knowledge-base that will be helpful in providing interpretable and actionable reports from the facts.
Land cover guides better gap filling in modis satellite images
LC-TSRNet: A Land-Cover-Guided Two-Stage Network for Annual MODIS Surface Reflectance Time Series Reconstruction
Abstract: MODIS surface reflectance (SR) products often suffer from data gaps due to cloud contamination and sensor malfunctions, limiting their applications in long-term and large-scale studies. Most existing methods rely on cloud-free observations from optical time series or introduce SAR time series as auxiliary information. However, due to the coarse spatial resolution of MODIS, cloud-free reference images are difficult to obtain, and SAR imagery is not well matched to the spatial resolution of MODIS, making it difficult to provide effective prior constraints. To address these issues, this study proposes LC-TSRNet for seamless reconstruction of annual MODIS SR products. In the first stage, an annual land cover map is introduced as prior knowledge, and CSPM is designed by leveraging the spectral similarity within identical land cover types, thereby providing prior spectral constraints for missing regions. In the second stage, to address large-area, persistent, and overlapping gaps in MODIS imagery, SMRM is designed to adaptively exploit and integrate multi-scale spatiotemporal contextual information. Meanwhile, to address the limited collaborative utilization of spatio-temporal-spectral information, 3DAM is designed to impose cross-dimensional joint constraints. Considering the lack of publicly available MODIS sample datasets, this study constructs the AIRMOD-TSR dataset. Extensive experimental results show that LC-TSRNet outperforms the comparison methods and achieves better reconstruction accuracy and spectral fidelity. Under the spatially adjacent scenario, LC-TSRNet improves PSNR by 0.56 dB and reduces SAM by 0.13°. The vegetation monitoring application further verifies the practical value of the reconstructed SR time series.
A100 foundation model improves crop and plant disease recognition accuracy
A100: A Hybrid Vision Foundation Model for Agricultural Plant Image Analysis
Abstract: The use of accurate vision models for crop monitoring, disease diagnosis, and plant phenotyping in agriculture is hindered by the lack of expertly annotated data, especially in developing countries. We propose A100, an agricultural vision foundation model that is pre-trained using self-supervised learning on 3 million unlabeled images from fields covering more than 100 crop species. A100 uses a hybrid CNN-Transformer backbone that fuses MBConv stages for local feature extraction with Transformer stages for global contextual representation. A100 uses pre-training with the integration of DINO self-distillation, iBOT masked patch reconstruction, and KoLeo uniformity regularization, resulting in features that are better than ImageNet-12K supervised representations for agricultural applications without any fine-tuning. By utilizing a frozen backbone, the accuracy for crop classification of A100 is 95.37%, which is +2.56% better than ImageNet-12K, and reduces the leaf count error by 10.4% on the GroMo25 phenotyping benchmark, proving that the same backbone can be used for classification and regression tasks. After full fine-tuning, the performance of A100 is 99.90% on 32-class crop identification and 99.02% on 44-class disease detection. On the difficult PlantDoc dataset, A100 outperforms all baselines, such as CvT-13 (64.89% against 63.56%). Remarkably, A100 obtains 98.01% accuracy on plant classification using just 1% of the labelled data (about 284 images per category), showing great label efficiency for use cases with limited labeling. Under an identical protocol, A100 also outperforms the publicly released agricultural foundation models FoMo4Wheat and LeafVision by more than 14 points at 1% labels. We plan to publicly release our pretrained model to allow agricultural professionals to adapt A100 for various plant analysis applications using limited annotations.
Semi-supervised learning detects sugarcane leaf diseases accurately with less data
Uncertainty-Aware Semi-Supervised Framework with Supervised Contrastive Learning for Sugarcane Leaf Disease Detection
Abstract: Sugarcane leaf diseases severely impact crop yield and quality, making accurate and timely detection critical for sustainable agriculture. Conventional deep learning models for plant disease detection depend on large annotated datasets, which are expensive to obtain and challenging to prepare due to challenges commonly observed across crop disease detection tasks, including (i) high intra-class variation caused by diverse symptom expressions across growth stages, (ii) subtle inter-class similarities between diseased and healthy tissues, and (iii) the risk of noisy labels degrading model reliability. To handle these challenges, we presented an Uncertainty-aware Mean-Teacher based Semi-Supervised Learning Disease Detection Network (U-SSDNet) that leverages unlabeled data while maintaining robustness. First, discrete wavelet transform preprocessing is applied to enhance lesion visibility and reduce intra- class variation. Subsequently, the KL divergence is employed to refine the pseudo-labels and reduce the impact of confirmation bias. At the same time, supervised contrastive learning is applied to make the features more distin- guishable and improve the separation among different classes. Experimental evaluations on sugarcane leaf disease datasets, considered a representative case study, demonstrate that the proposed approach achieves performance close to that of fully supervised models while requiring far fewer annotated samples and consistently outperforms state-of-the-art supervised and semi-supervised approaches.
Multi region dataset improves crop disease recognition across regions
Multi-Crop Leaf Disease Recognition: A Unified Benchmark and Cross-Region Study
Abstract: Deep learning models for crop leaf disease recognition routinely report near-perfect accuracy yet are typically trained and evaluated on a single dataset collected under controlled laboratory conditions, leaving their behavior under realistic cross-region domain shift poorly understood. We introduce MLD (Multi-crop Leaf Disease) dataset, a unified multi-region benchmark that combines six public crop-disease datasets from the USA, Asia, and Africa into a shared hierarchical taxonomy spanning 18 crops, 56 crop-disease classes (including one healthy class per crop) making 167,427 images. We define standardized single-source and pooled multi-source evaluation protocols that explicitly probe cross-region generalization. We also investigate whether exploiting the inherent crop-to-disease dependency via a hierarchical formulation (HiLeaD) that conditions disease prediction on the predicted crop improves recognition under cross-region shift. Under the HiLeaD, the model trained on PlantVillage achieves 99.07% in-domain disease F1 but collapses to 12.88% when tested on PlantDoc, exposing a severe cross-region domain gap. The model trained on the pooled MLD dataset partly recovers cross-region disease F1 from 12.88% to 39.64% on PlantDoc (HiLeaD), achieving a 26.76 percentage point improvement. The hierarchical formulation provides a consistent additional gain, ranging from 1.71 to 4.88 percentage points in disease F1 over the flat baseline under the MLD dataset indicating that progress in this area is currently limited more by data coverage and diversity than by model design.
AgriCountDINO improves plant counting with fewer parameters
AgriCountDINO: Parameter-Efficient Exemplar-Guided Counting and Localization in Agriculture
Abstract: Accurate counting and localization of plants and their organs support phenotyping and yield estimation, yet target appearance, scale, and density vary widely across species and imaging conditions. Exemplar boxes specify the target without category-specific retraining, and point predictions identify the individual instances contributing to the count. We introduce AgriCountDINO, a parameter-efficient exemplar-guided framework for joint counting and localization. It conditions frozen multiscale DINOv3 features on exemplar appearance and size, then progressively decodes them into target points. Missed-object recovery extends supervision to targets overlooked by initial matching, and exemplar-adaptive point NMS filters duplicate predictions according to exemplar scale. With 8.4M trainable parameters, approximately one-tenth of TasselNetV4's, AgriCountDINO achieves a three-shot MAE of 11.92 on the TPC-268 benchmark, reducing counting error by 9.7\% while providing individual target locations. Trained only on TPC-268, it achieves a zero-shot MAE of 14.25 on unseen generic object categories in FSC-147, improving upon the best compared zero-shot method by 6.0\% without target-domain training or fine-tuning.
Multi-stage vision system improves crop disease and pest diagnosis accuracy
Configurable Multi-Stage Vision Pipeline for Crop Disease and Pest Diagnosis
Abstract: Farmer.Chat is Digital Green's farm advisory service for smallholder farmers. When something looks wrong with a crop, the farmer takes a photograph and sends it, and that photograph is the whole question: no symptom described, no crop named, often no text at all. The service has to determine whether the picture can be used, what crop it shows, and what is wrong with it, from images taken on cheap phones in a field, in poor light and with a moving camera. The system doing this today cannot be adjusted. It has no adjustable thresholds for photograph rejection, crops and problems cannot be added, and there is no confidence cut-off to set. We study about 1.16 million photographs sent to Farmer.Chat from Ethiopia, India, Kenya and Nigeria. The production quality gate rejected 46.8% of the images it judged, over a quarter of those reaching diagnosis returned no crop name, and 35.8% of the labelled problems filed under "disease" are pests, identifiable without the crop. We therefore split the work into three stages: a quality gate (M0), a crop detector (M1), and a disease or pest detector (M2). Route A fills all three with one fine-tuned vision-language model (Qwen3-VL-4B) answering in a single call. Route B fills each with a small specialist model (DaViT, YOLO26). We replace our production GPT-4o quality gate with a small MobileNetV3 gate at 86.9% F1 in 12 ms. On one test set scored the same way for every system, a hierarchical DaViT-Base achieves 95.41% crop accuracy against 91.46% for the production baseline. It also leads on diagnosis and never declines to answer, while every language model in the comparison leaves a large share of rows with no diagnosis. The fine-tuned model retains two capabilities the specialists do not have: one call for all three stages, and a request for a better photograph when the image cannot support an answer.
Mesh reconstruction methods enhance 3D crop modeling quality
Evaluating Mesh Reconstruction Methods for Crop Phenotyping
Abstract: Phenotyping an agricultural crop is crucial for studying its entire life cycle, as it provides vital insights to improve yield and, ultimately, food production. Doing the same for crops grown on remote sites is a challenge for the specialists who cannot be available on-site. 3D reconstruction techniques offer a promising solution to this problem by enabling crop digitization, allowing specialists to access the resulting 3D crop models from anywhere at any time. In this work, we evaluate recent 3D reconstruction pipelines for crop phenotyping. We focus on 7 mesh reconstruction pipelines and measure the fidelity and consistency of their outputs qualitatively and quantitatively. Our results suggest that the meshes produced by the GGGS, PGSR, and 2DGS are preferable to the other pipelines, owing to their quantitative metrics and visually pleasing outputs. The GGGS pipeline is better than the second-best pipeline (2DGS) by about 27\% on the radar chart with 5 dimensions, namely, User ratings, Chamfer distance, LPIPS, PSNR, and SSIM.
Egomaze dataset aids first-person maize plant segmentation under heavy occlusion
EgoMaize: A First-Person Maize Instance Segmentation Benchmark under Severe Field Occlusion
Abstract: Close-range first-person field images are important for mobile maize phenotyping because many plant-level traits depend on in-canopy structures that are difficult to ob serve from overhead views. However, post-seedling maize fields create a difficult in stance segmentation setting: stems, leaves, tassels, and neighboring plants are elon gated, repetitive, and strongly occluded. We introduce EgoMaize, a compact benchmark for first-person maize instance segmentation, where the task is to predict ownership consistent plant masks and plant-owned stem/tassel cues from close-range field images with severe same-class overlap. Existing visible-only labels can fragment one physi cal plant into disconnected supervision, while full-amodal labels may require unverifi able completion behind neighboring plants or field objects. EgoMaize therefore uses an evidence-closed annotation workflow for occluded maize regions and assigns unreli able maize regions to ignore rather than background. Baseline results show that pre trained query-based grouping, boundary refinement, and high-resolution crop refine ment help different aspects of the task, but no architecture solves the coupled chal lenges of fine structure recovery, same-class instance ownership, and occlusion reason ing; occlusion-level analysis further shows that performance decreases as plant visi bility becomes more limited. The dataset and code are publicly available at https: //github.com/JaaaaaaaD/EgoMaize.
Vision language models better identify agriculture problems with rubric guidance
Vision-language models know more about agriculture than they show and rubric-grounded verifications close the gap
Abstract: Vision-language models (VLMs) show promise for agricultural classification, but zero-shot performance on disease, pest, damage, quality, and species identification remains poor, and it is unclear whether this reflects weak visual features or a failure to connect them to domain knowledge. We build a benchmark of 116 datasets, 834 classes, and 8,324 images spanning these tasks to isolate where the gap arises. Linear probing shows VLM vision encoders already encode agricultural features nearly as separable as a self-supervised DINOv3 baseline, ruling out weak visual representations as the primary bottleneck. Conditioning each model on an oracle reference description (an upper bound on its parametric knowledge) closes most of the gap left by an unaided lower bound, showing VLMs already know more about agriculture than they show. To close this gap without an oracle description at inference time, we structure test-time reasoning around a fixed, per-task diagnostic rubric: the model generates $K$ candidate responses and a Probabilistic Pivot Tournament (PPT) verifier, scored pairwise against the rubric, selects the best one. This nearly doubles judged F1 over the lower bound and matches or exceeds the upper bound on several tasks, notably pushing Gemma 4 E4B-it's disease F1 to 0.71, above its own upper bound of 0.60. However, the verifier's letter-scale confidence score has the opposite of its intended effect: filtering to its most confident predictions does not improve accuracy and correlates negatively with correctness across every model and pool size tested, so the score cannot serve as a measure of predictive uncertainty, and most of the observed gain likely comes from rubric-grounded generation rather than pairwise verification.