Papers for
agricultural monitoring teams
Papers whose findings have a practical use for this group, as judged from the abstract. Open a paper to read what it means in practice.
Unmixmamba improves crop mapping from modis time series data
UnMixMamba: Unmixing Guided State Space Subpixel Mapping of Crops from MODIS Time Series
Abstract: Subpixel mapping (SPM) of crop types from \SI{250}{m} Moderate Resolution Imaging Spectroradiometer (MODIS) time series to field-scale Agriculture and Agri-Food Canada (AAFC) labels supports acreage estimation and agricultural monitoring. Three difficulties remain: (i)~spectral-temporal coupling and mixed pixels that break direct coarse-to-fine classifiers; (ii)~intra-class endmember variability that a single spectrum per crop cannot capture; and (iii)~uniform refinement on the high-resolution (HR) grid, which treats every subpixel the same, so most of the effort goes to easy pixels while errors remain in the minority class. UnMixMamba addresses them as follows. For~(i), a temporal-spectral-spatial decoupled (TSSD) factorization estimates simplex fractions and drives AAFC classification from the same mixture field, instead of mapping low-resolution (LR) observations directly to HR logits. For~(ii), \(\times 8\) abundance super-resolution and a learnable per-crop variant endmember bank reconstruct the MODIS cube at LR and HR under a linear mixing model. For~(iii), the predicted crop fractions decide where a fixed Mamba token budget is spent, so HR refinement focuses on the minority class instead of the full grid. On Alberta 2015 under a fixed spatial-block protocol, UnMixMamba reaches OA 0.8397, mIoU 0.6640, AA 0.7837, and Kappa 0.7715, ahead of ST-DRes, ESPCN, FineCrop, AgriFM, and classical SPM baselines. The task is closed-set four-crop mapping inside a known agricultural mask.
Ground photos improve satellite crop mapping across time and place
Ground-to-Satellite Knowledge Distillation for Crop Classification under Temporal and Geographic Shift
Abstract: Continuous and up-to-date crop type mapping is essential for agricultural monitoring but is often hampered by limited reference data. The growing availability of ground-level field photographs offers a promising way to address this challenge. When combined with satellite time series, these images provide complementary perspectives on the same parcel, capturing crop characteristics from distinctly different perspectives. However, field photographs are not always available for each satellite pixel at inference time, limiting their potential in scalable crop type mapping. We investigate whether ground photographs can provide privileged supervision for crop classification built on pretrained satellite embeddings. A photo teacher based on frozen CLIP features supervises classifiers trained on AlphaEarth and TESSERA representations; photographs are used only during training. On a paired field photo and satellite imagery dataset with 17 crop classes, knowledge distillation consistently improves over satellite-only classification; for frozen embeddings the margin grows under temporal shift, reaching up to +5.5 macro-F1 points, and widens in geographic holdouts (+3.7 vs +3.0 in-distribution). These results show that ground-view supervision can complement satellite embeddings and improve their robustness without changing inference requirements.
AlphaEarth embeddings improve crop classification but limit cross-region use
Evaluating AlphaEarth Embeddings for Crop Classification: Separability, Temporal Dynamics, and Cross-Regional Transferability
Abstract: Earth Observation (EO)-based agricultural monitoring is shifting from pixel-level spectral analysis toward representation-driven modeling, yet systematic evaluation of learned representations across spatial, temporal, and domain-generalization dimensions remains limited. Geospatial foundation models generate high-dimensional embeddings encoding spatio-temporal land-surface properties, but their utility for agricultural applications remains insufficiently understood. This study presents a representation-agnostic evaluation framework integrating geometric separability, temporal dynamics, spatial robustness, and cross-regional generalisation. A 64-dimensional AlphaEarth embedding space is benchmarked against Sentinel-2 reflectance, NDVI-derived phenology, and harmonic features using field-scale data from the Conterminous United States (CONUS; 2017-2023) and Northern India (2021). Traditional features achieve strong linear separability (Fisher ratio), while embeddings provide superior distribution-aware separation -- Bhattacharyya and Mahalanobis distances up to an order of magnitude higher for spectrally similar pairs (e.g. Corn/Soybeans: 3.9 vs. 0.10). Embeddings uniquely capture multi-year crop rotation dynamics, reaching a separability ratio of 1.784 versus a maximum of 1.003 across all engineered features, and exhibit lower residual spatial autocorrelation of errors (mean Moran's $I \approx 0.17$). However, harmonic and NDVI features show stronger cross-continental transferability (US $\to$ India Macro F1: 0.493 vs. 0.326 for embeddings), reflecting better distributional alignment. The combined feature space yields balanced performance, supporting hybrid modeling. These findings reveal a fundamental trade-off between representational richness and cross-region transferability, providing a structured framework for feature selection in large-scale crop classification.
Structured latent models improve multi-target time series forecasting
BeliefGraph-JEPA: Structured Latent World Models for Action-Conditioned Time Series
Abstract: Action-conditioned time-series forecasting requires accounting for how future actions and exogenous forcings influence multiple targets through partially observed effects with different delays and persistence. Direct conditioning leaves the evolution and target-specific influence of these effects implicit in the predictor, while static relational graphs specify connections without tracking evolving effects. This motivates representing future-driver influence through structured latent states that evolve over the forecast horizon and route information to individual targets. We introduce BeliefGraph-JEPA, a structured latent world model that factorizes driver influence into typed latent-effect states. These states are rolled forward under future drivers and routed through a graph to target-specific nodes, forming the predictive base of a joint-embedding predictive architecture. A capacity-controlled residual supplements this base with direct driver information. On four multi-target clinical, agricultural, environmental, and industrial systems, the framework outperforms a range of pretrained and supervised known-future-covariate baselines. Matched controls isolate latent dynamics, future rollout, graph routing, and residual capacity; future rollout and graph-first residual routing improve forecasting across all four systems.
Deep learning improves brazilian soybean yield forecasts using weather data
An Input-Frugal Deep Learning Framework for Weather-Driven National Crop-Yield Forecasting: A Case Study of Brazilian Soybean
Abstract: Reliable, timely crop-yield forecasts are essential for market stability and risk management, yet many approaches rely on costly or hard-to-scale inputs. We present a frugal, transferable, and architecture-agnostic deep learning framework that uses routine weather as the only time-varying input plus two lightweight static context inputs (crop year and an agro-environmental label) to capture long-run change and regional heterogeneity, while supporting multiple sequence encoders under identical data requirements. Using a 20-season Brazilian soybean case study (2001/02-2020/21) with leave-one-year-out cross-validation, we benchmark MLP, CNN, LSTM, CNN-LSTM, a Transformer encoder and the Mamba state-space model against linear ridge regression and a five-year moving-average "farmer" baseline. All deep learning variants outperform ridge, and all sequential encoders surpass the non-sequential MLP. The Transformer achieves the best national accuracy (RMSE 149 kg ha^-1; rRMSE 5.3%; R^2 = 0.784), reducing error by 47.6% relative to the farmer baseline. In-season forecasts improve monotonically from early- to late-season issuance, reaching approximately 50% lower error than the baseline at the latest forecast point. Ablations indicate that the agro-environmental label and spatial instance expansion (multiple grid-node weather sequences per municipality-year) contribute positively without increasing input complexity. SHAP diagnostics suggest crop year explains most of the long-run trajectory, whereas within-season weather and agro-environmental context primarily drive interannual deviations, with moisture/cloud and thermal-demand variables dominating. Overall, the framework is straightforward to deploy across other crops and geographic regions and is naturally compatible with operational weather forecasts for routine monitoring.
Improved wheat area maps from satellite data reduce official record errors
A Dual-Track Curation-and-Classification Framework for Resolving Ground-Truth Label Noise in Operational Sentinel-2 Wheat Area Estimation
Abstract: Operational estimation of wheat-cultivated area is persistently constrained by discordance between administrative record-keeping and remotely sensed classification products. We address this administrative reference discordance for the 2022 Rabi season in Patiala district, Punjab, India, using a thirteen-timestep Sentinel-2 NDVI time series. A curated 849-sample reference dataset, developed through an iterative rule-based bootstrapping procedure, underpins both a feature sensitivity analysis and an operational classifier. Feature sensitivity independently assessed via Cohen's d and gradient-boosted information gain converges on the February-to-March grain-fill window as most discriminative. Four classifiers (1D-CNN, LSTM, hybrid CNN-LSTM, and XGBoost) were benchmarked on an identical 679/170 sample split. XGBoost achieved the highest overall accuracy (78.82%) against deep-learning baselines (64-66%), consistent with tree-based ensembles' favourable parameter-to-sample ratio in low-sample regimes. At full-population deployment across 36.25 million valid district pixels, the operational classifier attained 86.31% precision and 71.05% recall. The predicted wheat extent deviated by only +2.99% from the official tabular target, whereas the government's spatial reference mask exhibited a +25.11% positive area bias against the identical target. This asymmetry indicates that a classifier trained on an auditor-curated reference set reconciles more closely with the official tabular area than the spatial product conventionally used to validate it. We present this dual-track curation-and-classification framework as a methodological reference for crop-area reconciliation in label-noisy administrative settings.
Hierarchical token clustering improves hyperspectral image classification accuracy
Token Clustering and Semantic Sequence Mamba for Hyperspectral Image Classification
Abstract: Although hyperspectral images (HSIs) provide rich spectral-spatial information, accurate pixel-level classification remains challenging because of spectral-spatial heterogeneity and complex spatial structures. Existing vision state space models (Mamba) typically construct sequences according to predefined spatial neighborhoods, without explicitly accounting for semantic similarity or spatial non-stationarity. To address this limitation, we propose Token Clustering and Semantic Sequence Mamba (STMamba), which organizes sparse tokens into semantically coherent sequences for hyperspectral image classification with the following features. First, at the macro level, a hierarchical encoder decoder progressively selects semantic tokens with the Token Clustering Module (TCM) and restores dense features using a parameter-free Cross-scale Neighborhood Attention (CNA) Upsampler. Second, at the micro level, TCM first identifies representative cluster centers through density-aware clustering and estimates soft memberships based on feature similarity. A quadtree-based dynamic selection strategy then retains sparse and spatially distributed tokens from each semantic cluster, forming coherent semantic-token sequences while reducing redundant pixel-wise representations. Third, parallel Spatial and Spectral Semantic-wise Sequencing Mamba (SWSM) modules capture complementary long-range spatial and spectral dependencies within homogeneous semantic token sequences while suppressing irrelevant interactions across heterogeneous regions. Experimental results on three large-scale benchmark datasets demonstrate that STMamba outperforms the SOTA methods with respect to quantitative and qualitative results.
Geospatial embeddings improve regional cropland maps with fewer labels
From Foundation Embeddings to Cropland Maps: Label Efficiency, Temporal Transferability and Independent Human Validation
Abstract: Geospatial foundation models provide reusable representations of satellite imagery that support downstream mapping with limited task-specific modelling. We evaluate whether annual AlphaEarth embeddings support binary cultivated-versus-non-cultivated mapping in Maine, USA, using 192 spatially separated patches and labels derived from the USDA Cropland Data Layer (CDL). Without fine-tuning the foundation model, a lightweight classifier reaches 93.7% overall accuracy and 90.8% balanced accuracy on held-out patches. Logistic regression is within 0.3 percentage points of a gradient-boosted ensemble, while a nearest-class-centroid rule, which uses class centroids but fits no parameters, reaches 90.2%. A balanced sample of 60,000 labelled pixels is within 1.3 percentage points of the full pool of 8.6 million pixels; because pixels are spatially autocorrelated, this result concerns pixel-sample efficiency rather than 60,000 independent annotation sites. In a same-region transfer experiment, classifiers trained in one year remain accurate across 2018 to 2023. Against a blind, two-interpreter consensus at 385 randomly sampled points in one contiguous 2023 block, the AlphaEarth-plus-random-forest map agrees at 95.3% ($κ=0.82$), compared with 91.7% for the CDL ($κ=0.72$; exact two-sided McNemar $p=0.0161$). This local result is consistent with partial smoothing of CDL label noise, but it does not establish statewide correction of the reference product. On the same points, the difference from a fine-tuned TerraMind segmentation model is not statistically significant (95.3% versus 93.5%; $p=0.14$), and the experiment is not a controlled comparison of computational cost. These results support frozen geospatial embeddings as a low-compute candidate for regional cropland mapping, subject to the limits of a single-state study, a 30 m-derived training reference, and a one-block human validation.